DRX325720
Illumina HiSeq 2500 paired end sequencing of SAMD00425311

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
him-1

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

sample_name
01_HIM1_CeWT_H2Av_Dro
antibody
HIM-1_ChIP
biological_replicate
replicate_1
dev_stage
adult
phenotype
wild type
sex
hermaphrodite
spike in
Drosophila chromatin
strain
N2

Sequenced DNA Library

library_name
ChIP_HIM1_CeWT_H2Av_Dro_replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonication and NEBNext Ultra II DNA Library Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
11514675
Reads aligned (%)
98.3
Duplicates removed (%)
18.0
Number of peaks
780 (qval < 1E-05)

ce10

Number of total reads
11514675
Reads aligned (%)
98.3
Duplicates removed (%)
18.0
Number of peaks
780 (qval < 1E-05)

Base call quality data from DBCLS SRA