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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: him-1
wikigenes
PDBj
CellType: Adult
ATCC
MeSH
RIKEN BRC
DRX325720
Illumina HiSeq 2500 paired end sequencing of SAMD00425311
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
him-1
Cell type
Cell type Class
Adult
Cell type
Adult
NA
NA
Attributes by original data submitter
Sample
sample_name
01_HIM1_CeWT_H2Av_Dro
antibody
HIM-1_ChIP
biological_replicate
replicate_1
dev_stage
adult
phenotype
wild type
sex
hermaphrodite
spike in
Drosophila chromatin
strain
N2
Sequenced DNA Library
library_name
ChIP_HIM1_CeWT_H2Av_Dro_replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonication and NEBNext Ultra II DNA Library Prep Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
11514675
Reads aligned (%)
98.3
Duplicates removed (%)
18.0
Number of peaks
780 (qval < 1E-05)
ce10
Number of total reads
11514675
Reads aligned (%)
98.3
Duplicates removed (%)
18.0
Number of peaks
780 (qval < 1E-05)
Base call quality data from
DBCLS SRA